PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0017s00960.1
Common NameLR48_Vigan04g188400
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 202aa    MW: 22296.8 Da    PI: 7.434
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0017s00960.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.74.6e-21857255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                       y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ kl+g
  Vang0017s00960.1  8 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYKLRG 57
                      59******9.**********965...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.35E-34767No hitNo description
SMARTSM003807.0E-38871IPR001471AP2/ERF domain
PROSITE profilePS5103223.143865IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-23866IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-32866IPR001471AP2/ERF domain
PRINTSPR003671.4E-11920IPR001471AP2/ERF domain
PfamPF008471.4E-14957IPR001471AP2/ERF domain
PRINTSPR003671.4E-113147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009611Biological Processresponse to wounding
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010017Biological Processred or far-red light signaling pathway
GO:0045595Biological Processregulation of cell differentiation
GO:0071472Biological Processcellular response to salt stress
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MPLKPTKLYR GVRQRHWGKW VAEIRLPKNR TRLWLGTFDT AEEAALAYDK AAYKLRGDFA  60
RLNFPNLRHQ GSSVGGGFGE YKPLHSSVDA KLQAICEGLA EMQKQGKTEK PQGSSKRSRS  120
KVAPPPEKGD SEKGSDDNTS NKCCKVEASS SPVTTESEGS EGSSPLSDLT FADVSEPQWE  180
GDSDSFNLYK YPSYEIDWDS L*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21765160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
3gcc_A3e-21765463ATERF1
2gcc_A3e-21765463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00026PBMTransfer from AT1G78080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007136233.11e-139hypothetical protein PHAVU_009G029600g
SwissprotQ8H1E45e-88RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBLA0A0S3RCV31e-149A0A0S3RCV3_PHAAN; Uncharacterized protein
TrEMBLA0A0L9UG481e-149A0A0L9UG48_PHAAN; Uncharacterized protein
STRINGGLYMA06G11010.11e-106(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105732109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-66related to AP2 4
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]